| BNFO 301 |
Items for each day generally indicate what is to be done before class |
Spring 2010
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| 1: Intro to Molecular Biology
Read - Belasco et al (1985) + tour (Part I) Problem Set 1 - Intro to Molec Biol (focus on B2, B10, C4, C6, D4) Questionnaire Class cancelled -- Play in the snow! Please e-mail BioBIKE log by end of Tuesday |
3: Intro to Molecular Biology and Genome Sequencing
Discussion - Belasco's Differential expression... + tour (Part II) Notes - Overview of genome sequencing Notes - Where sequences come from Questionnaire Problem Set 1 - Intro to Molec Biol (focus on B2, B10, C4, C6, D4) Lab (if you can make it) - Intro to BioBIKE and Molec Biol Tour - Alien genetic code Problem Set 2 - Molec Biol Investigations Please e-mail in by end of Friday |
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| 8: Genome Sequencing
Notes: Where sequences come from Retrospective: Belasco et al. (1985) + Tour I and II Article: Myers et al. (2000) + Tour Questionnaire Lab: Sequence Assembly example Problem Set 1: Intro to Molec Biol (by experiment) Problem Set 2: Molec Biol Investigations (by request) Tour: Alien genetic code |
10: Genome Sequencing Notes: Where sequences come from Article: Myers et al. (2000) + Tour Problem Set 2: Molec Biol Investigations Please hand in by end of Friday Problem Set 3: Genome sequencing Questionnaire Visual aids: (related to Myers et al and sequencing/assembly) |
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| 15: Genome Sequencing Article: Myers et al. (2000) + Tour (especially SQ14 of the tour) Discussion: Problem Set 3 (Genome sequencing) Questionnaire Lab: Problem Set 3 (Genome sequencing) |
17: General problem session Questionnaire - What questions to discuss? Special Review Session: 10:00 BNFO Computer Lab Special Review Session: 11:00 BNFO Computer Lab Exam 1 distributed What to expect Ground rules |
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| 22: Exam 1 due 8:30 AM Post-exam questionnaire Genome Analysis (no reading for today) Post-mortem: Exam 1 Lab: Intro to BioBIKE Notes: Introduction to mapping Notes: Elements of a loop Problem Set 4: Practice with loops and mapping |
24: Genome Analysis Notes: Search for FMRP in Drosophila Notes: Introduction to mapping Notes: Elements of a loop Post-mortem: Exam 1 (continued) Questionnaire Group preference survey (Please submit by Friday morning) |