Biol 591 
Introduction to Bioinformatics
Fall 2003 

August September October November December

Monday
 
Wednesday
 
Friday
3: NO CLASS
    (but consultations highly encouraged)
  5: Scenario 6: Microarray analysis
    Introduction: The Story
    Presentation: Microarray Technology
    Exam 2 due
  7: Scenario 6: Microarray analysis
    Read Golub et al (1999)
    Notes: Help with Golub et al
    Questionnaire: (HTML)
    Presentation: Distinguishing clinical subgroups
10: Scenario 6: Microarray analysis
      Write program to predict class distinction
            starting from shell
      Notes: Hints and advice
      Questionnaire: (HTML)
  12: Scenario 6: Microarray analysis
      Problem Set 6: Focus on 6 and 8
      Seminar: Jen Fettweis, 12:00 Sanger 8-036
  14: Scenario 7: Protein threading
      Introduction: The Story
      Notes: Protein overexpression
      Notes: Resources for protein threading
      Questionnaire: (HTML)
17: Scenario 7: Protein threading
      Notes: Threading program and beyond
      Questionnaire: (HTML)
  19: Scenario 7: Protein threading
      Notes: (Same as Monday's)
      Questionnaire: (HTML)
      Scenario 8: Markov models
      Introduction: The Story
  21: Scenario 7: Protein threading
      Problem Set 7: Focus on 7.4 and 7.3
24: Scenario 8: Markov models
      Notes: Detecting pathogenicity islands
      Questionnaire: (HTML)
  26: Scenario 7: Protein threading
      Notes: Son of ThreadProtein
      Scenario 8: Markov models
 
  28: THANKSGIVING