BNFO 301 
Introduction to Bioinformatics
Questionnaire on: Finding Regulatory Motifs
(please press SUBMIT button when finished)
(If you encounter a question you've answered in a previous questionnaire and nothing has changed, just skip over it)
Spring 2014 


I. Basic Information

A. Your name 
II. Old Business
  1. Any final concerns about Search for FMRP?
  2. Any final concerns about Gene Regulation and Bacteriophages?
    (e.g.
    • What is lysogeny and how is the Repressor involved in achieving it?
    • How does the lambda Repressor and Cro protein act on the regulatory region upstream from the cI and cro genes?
    • How are regulatory feedback loops achieved?
     
III. Search for Regulatory Sequences
  1. How far did you get in the tour Search for Regulatory Sequences?

     
  2. Do you understand the different search methods (exact match, pattern match, COUNTS-OF-K-MERS) and why they give different results?
  3. Do you understand how MOTIFS-IN works and how its related to PSSMs?
  4. Do you understand the output of MOTIFS-IN?
  5. Were you able to find the lambda operators using MOTIFS-IN?
  6. Were you able to find the regulatory sequences of interset to Gomathi et al (2007)?
     

Do you have any favorite study questions (SQ1-SQ22) you think need discussion?  

V. Miscellaneous
Any other comments, questions, suggestions, or concerns you may have?

Thanks!

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