| BNFO 301 |
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Spring 2008
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| 2: No class
Individual meetings Tue & Wed |
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| 7: Viral Metagenome Project - Initial Analysis
Notes: Initial analysis of reads Questionnaire Lab: Problem Set 6: Initial Analysis Probability and statistics |
9: No class
Individual meetings Tue & Wed 10:00 Review Session - Life Sci Comp lab |
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| 14: Metagenome Project and Genome Evolution Discussion: What are the repeated sequences in reads? Answer SQ23, 26, and 27 from notes for April 7 Read: Howe et al (2001). Trends in Genetics 17:147-152 Manuscript Evolution Skim: Rohwer & Edwards (2002). J Bacteriology 184:4529-4535. The Phage Proteomic Tree: a Genome-Based Taxonomy for Phage Questionnaire Lab: Build a sequence analysis tool |
16: No class
Individual meetings Tue & Wed 10:00 Review Session - Life Sci Comp lab |
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| 21: Genome Evolution Read: Howe et al (2001). Trends in Genetics 17:147-152 Manuscript Evolution Skim: Rohwer & Edwards (2002). J Bacteriology 184:4529-4535. The Phage Proteomic Tree: a Genome-Based Taxonomy for Phage Questionnaire Lab: Build a phylogenetic tree Problem Set 7: Metagenome Analysis Part 2 |
23: No class
Individual meetings Tue & Wed 10:00 Review Session - Life Sci Comp lab |
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| 28: General problem session Questionnaire - What questions should we discuss? Exam 1 distributed at end of day. Due end of Friday. What to expect Ground rules Lab: Review Session |
30: No class
Individual meetings Tue & Wed (to discuss projects and exam) |