BioBIKE
(LENGTH-OF entity [options])
(LENGTHS-OF entity [options])

OPTIONS                

AS NAME | VALUE | ANY
IN organism

VERBOSE TRUE | FALSE
  • Returns the length of the given entity:
          * Gene: length in nucleotides (including stop codon)
          * Protein: length in amino acids
          * Contig: length in nucleotides
          * Organism: sum of length of all contigs
          * string: length of string
  • If the entity is a list, the lengths of the components of the list are returned, not the length of the list
    (use LENGTH if you want the length of a list)
  • Gene, protein, contig, and organism may be specified as a frame, string, symbol, or bare word
Example:
  (LENGTHS-OF (PROTEINS-OF S6803))

          [Result is a list consisting of the length of each protein of Synechocystis PCC6803]

Example:
  (LENGTH-OF ssrA IN A7120)

          [Result is the length of the ssrA gene, specifically the one in Anabaena PCC7120]

  (LENGTHS-OF (REPLICONS-OF Npun))

          [Result is a list consisting of the length of each replicon of Nostoc punctiforme]