BNFO 301 
Introduction to Bioinformatics
Questionnaire on: Tour of Myers et al (2000) / Mendel
(please press SUBMIT button when finished)
(If you encounter a question you've answered in a previous questionnaire and nothing has changed, just skip over it)
Spring 2014 


I. Basic Information

A. Your name 
II. Old Business
A. Anything worth discussing about increasing your abilities in BioBIKE?
   

B. Any final concerns about Where sequences come from (dideoxy sequencing, shotgun genome assembly,...)?
   

C. Any concerns about mapping, loops, or Problem Set 3?
   

III. Tour of Myers et al (2000)

A. How far have you gotten in this tour?
   

B. Coverage, reads, mate pairs,... OK with all this?

C. Do you see how the basic tools to calculate probability can help you determine the degree of coverage of a genome?

D. Are there any particular study questions in that tour that you think warrant class discussion? How about SQ 10 and 14?

   

IV. Introduction to Mendel and statistics
  1. How far have you gotten in Was Mendal Right, Part II?

     
  2. Any issues concerning the biology, i.e. Was Mendal Right, Part I?
     
  3. Are you OK with the process of making your own functions in BioBIKE?
     
  4. Are you OK with what a chi-squared test is really doing, to the extent that you could do such a test yourself by simulation (not merely plugging numbers into a formula)?
     
V. Miscellaneous
Any other comments, questions, suggestions, or concerns you may have?

Thanks!

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