I. Basic Information
A. Your name
II. Old Business
A. Anything worth discussing about increasing your abilities in BioBIKE?
B. Regarding Where sequences come from:
B1. How far have you gotten in these notes?
B2. DNA libraries, dideoxy sequencing, shotgun genome assembly,...
What specific questions have you developed regarding the technical aspects of genome sequencing?
III.
Tour of Myers et al (2000)
A. How far have you gotten in this tour?
B. Coverage, reads, mate pairs,... OK with all this?
C. Do you see how the
basic tools to calculate probability can help you determine the degree of coverage of a genome?
D. Are there any particular study questions in that tour that you think warrant class discussion? How about SQ 10 and 14?
IV. Introduction to Mapping and Loops
- How far did you get in the
Introduction to Mapping?
- How far did you get in the
Introduction to Loops?
- Needless to say, the notes work much better if you try each example in BioBIKE yourself. Have you done so?
- What concerns do you have regarding mapping and loops?
- Any concerns regarding anything in
Problem Set 3?
V. Miscellaneous
Any other comments, questions, suggestions, or concerns you may have?
Thanks!
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