Resources
BioBIKE Portal
- Access to various BioBIKE environments
BioBIKE log template
- Use it to log each interaction you have with BioBIKE
- It is NOT a way of keeping track of your time
- It will provide the developers of BioBIKE with
the benefit of your experience -- what difficulties you encountered and what went right
Readings, Tours, and Investigations
Article:
BioBIKE: A Web-based, programmable, integrated biological knowledge base
A brief description of how BioBIKE works
(click Print PDF for a large file or Screen PDF for a smaller file)
Primer:
VPL user interface - Also accessible from any BioBIKE
instance, under HELP (red button), VPL Tutorial
(overlaps somewhat with below)
Tour:
BioBIKE syntax and conventions (overlaps somewhat with above)
Primer:
Basic Syntax (A.1. and A.2.) -
Also accessible from any BioBIKE instance, under HELP (red button), General Help
Investigation:
What is a Gene?
and
companion
Notes:
Introduction to mapping
Notes:
Elements of a loop
Notes:
Pattern matching
Examples: Go to BioBIKE Portal
Click Guided tours of BioBIKE
Click a tour on the left (newer ones on top)
Problem Sets
Problem Set 2:
Molecular Investigations
Problem Set 4:
Practice with loops and mapping
To Hand In
21 Jan, end of day*: Responses to questions from What is a Gene?
30 Jan, end of day*: Problem Set 2
11 Feb, end of day*: Problem Set 4
Periodically: BioBIKE log
* (however you care to define it, within reason)