BNFO 301 
Introduction to Bioinformatics
Questionnaire on Gomathi tour
(please press SUBMIT button when finished)
(and please don't use quotation marks in your answers. They break the questionnaire program!)
Spring 2013 

I. Basic Information

A. Your name 
II. Gene Regulation and Bacteriophage
     Madsen et al (1999)
     Hatfull et al (2008)
To suggest topics of profitable discussion concerning any of these three areas,
please go to this questionnaire

III. Tour of Gomathi et al (2007)

  1. How far did you get in the tour on Gomathi et al (2007)?  
  2. Do you understand how temperate phages differ from virulent phages and how you might identify a temperate phage from an analysis of its genome?
  3. Do you understand how to use GeneMark to identify open reading frames (as well as its limitations)?
  4. Do you understand how to look for transmembrane regions in proteins and why this might be something of interest?
  5. Do you understand how to (in some cases) identify the family of a protein? ...and what a protein family is?
  6. Do you understand how you might identify repeated sequences in a phage genome and why that might be of interest?
  7. Ideas on how to identify an attachment site of an unknown temperate mycobacteriophage?
  8. Favorite study questions? What's the problem with them?
     
IV. Miscellaneous
How do you think your project is going?
     
Any miscellaneous comments, questions, suggestions, concerns?
     

Thanks!

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