BNFO 301 
Introduction to Bioinformatics
Questionnaire on Genome Analysis (Part II) - Tour of Hatfull et al (2008)
(please press SUBMIT button when finished)
(and please don't use quotation marks in your answers. They break the questionnaire program!)
Spring 2011 

I. Basic Information

A. Your name 
II. Tour of Hatfull et al (2008)

  • How far were you able to get in the tour (Part I and Part II)?
  • Do you appreciate the difference between a review article and a research article?
  • Are you comfortable with notions of orf and GC fraction?
  • Are you comfortable with dotplots, such as the one shown in Fig. 2?
  • Are you comfortable constructing families of proteins such as those shown in Fig. 3 (I mean doing it yourself)?
  • Are you comfortable with the meaning and significance of Fig. 4?
  • Any other questions on your mind about the article or related matters?
     
III. Mapping and Looping

  • How far have you gotten in the notes Introduction to mapping, including (of course) EXPLORING the examples?
  • How far have you gotten in the notes Elements of a loop, including (as always) EXPLORING the examples?
  • Do you have a basic idea what mapping does?
  • Do you have a basic idea what looping does?
  • Do you have an idea why mapping and looping might be useful in analyzing an unknown phage genome?
     
IV. Miscellaneous

Put here any miscellaneous comments, questions, suggestions, concerns you may have.
     

Thanks!

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