BNFO 301 
Introduction to Bioinformatics
Questionnaire on Genome Analysis - Tour of Gomathi et al (2007)
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(and please don't use quotation marks in your answers. They break the questionnaire program!)
Spring 2010 

I. Basic Information

A. Your name 
II. Tour of Gomathi et al (2007)

  • How far did you get?
  • Do you understand how temperate phages differ from virulent phages and how you might identify a temperate phage from an analysis of its genome?
  • Do you understand how to use GeneMark to identify open reading frames (as well as its limitations)?
  • Do you understand how to look for transmembrane regions in proteins and why this might be something of interest?
  • Do you understand how to (in some cases) identify the family of a protein? ...and what a protein family is?
  • Do you understand how you might identify repeated sequences in a phage genome and why that might be of interest?
  • Ideas on how to identify an attachment site of an unknown temperate mycobacteriophage?
     
IV. Miscellaneous

Are you beginning to see what you might be doing on the upcoming phage project?

Put here any other miscellaneous comments, questions, suggestions, concerns you may have.
Did anything interesting over break?
     

Thanks!

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