| BNFO 301 |
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Spring 2007
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| 2: Genome Analysis - Codon usage contrasts
Analysis of viral metagenome fragments Lab - First look at viral fragment Using ViroBIKE |
4: No class
Meetings to discuss project Tuesday and Wednesday. |
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| 9: Genome Analysis - Codon usage contrasts (continued)
Issues related to Problem sets 4 & 5 Problem set 4 - Loops and mapping Problem set 5 - Genome analysis investigations Lab: Resolving issues with problem sets Hand in: Problem set 4 (2, 7); Problem set 5 (3, 8, 13) (by end of day on Tuesday) |
11: No class
Meetings to discuss project Tuesday and Wednesday. |
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| 16: Genome Evolution Read: Howe et al (2001). Manuscript Evolution (analogous to DNA sequence evolution) Read (gently): Rohwer & Edwards (2002). The Phage Proteomic Tree: a Genome-Based Taxonomy for Phage Lab: Global codon usage comparisons |
18: No class
Meetings to discuss project Tuesday and Wednesday. |
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| 23: Example of analysis of metagenome fragment | 25: No class
Meetings to discuss project Tuesday and Wednesday. |
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| 30: General problem session Questionnaire - What questions should we discuss? Exam 1 distributed at end of day. Due end of Friday. What to expect Ground rules |