BNFO 300 
Molecular Biology Through Discovery
Resources and Links
Fall 2018 

Essential resources
Other useful resources
Summer research opportunities


Essential Resources

  • BioBIKE portal
        - Direct route to CyanoBIKE instance
        - Direct route to ViroBIKE instance
  • Course meeting rooms
    Use it to meet others in the class at a distance You have access to two virtual meeting rooms (powered by Zoom), which you may use to meet with colleagues, TAs, or me. The rooms allow you to share screens and supports voice communication if your computer has a microphone. After the first day of class, I'll send you detailed instructions on how to get to the rooms.

Other Useful Resources

  • Abbreviations
    List of nucleotide, amino acid abbreviations, and genetic code
  • Codon usage tables (courtesy of Yasukazu Nakamura)
    Codon frequencies for large number of sequenced genomes
  • FirstGlance in Jmol
    Site to display molecular structures
  • FoldIt
    Protein-folding game that engages gamers in solving problems beyond the reach of computers
  • GeneMark
    Predict open reading frames in DNA sequences
  • Genetic code
    Useful on line reference to recall code, types of amino acids, and their abbreviations
  • Molecular Biology of the Cell (Bruce Alberts et al, 2002; 4th edition)
    Molecular Cell Biology text book. Free for searching but not browsing.
  • Mycobacteriophage DataBase
    A site summarizing what is known concerning mycobacteriophages
  • NCBI
    National Center for Biotechnology Information: Home of Blast, Entrez, much else
  • Protein Data Base
    Large collection of data concerning protein structure and sequence
  • Protein Explorer and help
    Site to display molecular structures, offering more power than FirstGlance, at the cost of a more complicated interface
  • Proteopedia
    Repository of protein structures and educational tools
  • Scale of the Universe
    Examples of objects with sizes ranging from 10-35 to 10+27 m
  • VCU Library
    Apart from its many other merits, the library enables you to reach electronic journal articles that would otherwise be restricted.

Summer Research Opportunities