A. How comfortable are you with the basic principles behind constructing PSSMs? For example, could you have made Table 1B (Table of occurrences) yourself?
B. How comfortable are you about going from a table of occurences to a frequency table? For example, could you have made Table 1C yourself?
C. How comfortable are you about using a PSSM to score a sequence? For example, could you have determined the values in the line marked "Score" of Table 2? (Never mind pseudocounts for the moment)
Comments for questions II.A through II.C: |
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